CFSAN SNP Pipeline 2 (CSP2): a pipeline for fast and accurate SNP distance estimation from bacterial genome assemblies

Background Accurate genetic distance estimation from pathogen whole-genome sequence data is critical for public health surveillance, and with respect to food safety it provides crucial information within traceback and outbreak investigations. The computational demands required for contemporary bioin...

Full description

Saved in:
Bibliographic Details
Main Authors: Robert Literman, Jayanthi Gangiredla, Hugh Rand, James B. Pettengill
Format: Article
Language:English
Published: PeerJ Inc. 2025-07-01
Series:PeerJ Computer Science
Subjects:
Online Access:https://peerj.com/articles/cs-2878.pdf
Tags: Add Tag
No Tags, Be the first to tag this record!