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  1. 1

    The triad interaction of ULK1, ATG13, and FIP200 is required for ULK complex formation and autophagy af Yutaro Hama, Yuko Fujioka, Hayashi Yamamoto, Noboru Mizushima, Nobuo N Noda

    Udgivet 2025-06-01

    In mammals, autophagosome formation, a central event in autophagy, is initiated by the ULK complex comprising ULK1/2, FIP200, ATG13, and ATG101. However, the structural basis and mechanism underlying the ULK complex assembly have yet to be fully clarified. Here, we predicted the core interactions or...

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  2. 2

    ESAT-6 undergoes self-association at phagosomal pH and an ESAT-6-specific nanobody restricts M. tuberculosis growth in macrophages af Timothy A Bates, Mila Trank-Greene, Xammy Huu Wrynla, Aidan Anastas, Sintayehu K Gurmessa, Ilaria R Merutka, Shandee D Dixon, Anthony Shumate, Abigail R Groncki, Matthew AH Parson, Jessica R Ingram, Eric Barklis, John E Burke, Ujwal Shinde, Hidde L Ploegh, Fikadu G Tafesse

    Udgivet 2024-05-01

    Mycobacterium tuberculosis (Mtb) is known to survive within macrophages by compromising the integrity of the phagosomal compartment in which it resides. This activity primarily relies on the ESX-1 secretion system, predominantly involving the protein duo ESAT-6 and CFP-10. CFP-10 likely acts as a ch...

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  3. 3

    Cestode larvae excite host neuronal circuits via glutamatergic signalling af Anja de Lange, Hayley Tomes, Joshua S Selfe, Ulrich Fabien Prodjinotho, Matthijs B Verhoog, Siddhartha Mahanty, Katherine Ann Smith, William Horsnell, Chummy Sikasunge, Clarissa Prazeres da Costa, Joseph V Raimondo

    Udgivet 2025-07-01

    Neurocysticercosis (NCC) is caused by infection of the brain by larvae of the parasitic cestode Taenia solium. It is the most prevalent parasitic infection of the central nervous system and one of the leading causes of adult-acquired epilepsy worldwide. However, little is known about how cestode lar...

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  4. 4

    Aiming for spatial and temporal control of gene expression af Stanislao Igor Travisano, Ching-Ling Lien

    Udgivet 2025-07-01

    Bioluminescent imaging is helping researchers better understand the effectiveness of tissue regeneration enhancers delivered to injured heart tissue by different adeno-associated virus vectors.

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  5. 5

    Effects of experiencing the COVID-19 pandemic on optimistically biased belief updating af Iraj Khalid, Orphee Morlaas, Hugo Bottemanne, Lisa Thonon, Thomas Da Costa, Philippe Fossati, Liane Schmidt

    Udgivet 2025-06-01

    Optimistically biased belief updating is essential for mental health and resilience in adversity. Here, we asked how experiencing the COVID-19 pandemic affected optimism biases in updating beliefs about the future. One hundred and twenty-three participants estimated the risk of experiencing adverse...

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  6. 6

    Forward genetics in C. elegans reveals genetic adaptations to polyunsaturated fatty acid deficiency af Delaney Kaper, Uroš Radović, Per-Olof Bergh, August Qvist, Marcus Henricsson, Jan Borén, Marc Pilon

    Udgivet 2025-07-01

    Polyunsaturated fatty acids (PUFAs) are essential for mammalian health and function as membrane fluidizers and precursors for signaling lipids, though the primary essential function of PUFAs within organisms has not been established. Unlike mammals who cannot endogenously synthesize PUFAs, C. elegan...

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  7. 7

    Heterogeneous efflux pump expression underpins phenotypic resistance to antimicrobial peptides af Ka Kiu Lee, Urszula Łapińska, Giulia Tolle, Maureen Micaletto, Bing Zhang, Wanida Phetsang, Anthony D Verderosa, Brandon M Invergo, Joseph Westley, Attila Bebes, Raif Yuecel, Paul A O'Neill, Audrey Farbos, Aaron R Jeffries, Stineke van Houte, Pierluigi Caboni, Mark AT Blaskovich, Benjamin E Housden, Krasimira Tsaneva-Atanasova, Stefano Pagliara

    Udgivet 2025-07-01

    Antimicrobial resistance threatens the viability of modern medical interventions. There is a dire need to develop novel approaches to counter resistance mechanisms employed by starved or slow-growing pathogens that are refractory to conventional antimicrobial therapies. Antimicrobial peptides have b...

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  8. 8

    CRISPR-edited DPSCs constitutively expressing BDNF enhance dentin regeneration in injured teeth af Ji Hyun Kim, Muhammad Irfan, Sreelekshmi Sreekumar, Atsawasuwan Phimon, Stephanie Kim, Seung Chung

    Udgivet 2025-07-01

    Dental caries, a prevalent global health issue, results from complex bacterial interactions. In response to harmful stimuli, a desirable outcome for the tooth is the formation of tertiary dentin, a protective reparative process that generates new hard tissue. This reparative dentinogenesis is associ...

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  9. 9

    A neuronal least-action principle for real-time learning in cortical circuits af Walter Senn, Dominik Dold, Akos F Kungl, Benjamin Ellenberger, Jakob Jordan, Yoshua Bengio, João Sacramento, Mihai A Petrovici

    Udgivet 2024-12-01

    One of the most fundamental laws of physics is the principle of least action. Motivated by its predictive power, we introduce a neuronal least-action principle for cortical processing of sensory streams to produce appropriate behavioral outputs in real time. The principle postulates that the voltage...

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  10. 10

    Increase of cell surface vimentin is associated with vimentin network disruption and subsequent stress-induced premature senescence in human chondrocytes af Jana Riegger, Rolf E Brenner

    Udgivet 2023-10-01

    Accumulation of dysfunctional chondrocytes has detrimental consequences on the cartilage homeostasis and is thus thought to play a crucial role during the pathogenesis of osteoarthritis (OA). However, the underlying mechanisms of phenotypical alteration in chondrocytes are incompletely understood. H...

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  11. 11

    Srs2 binding to proliferating cell nuclear antigen (PCNA) and its sumoylation contribute to replication protein A (RPA) antagonism during the DNA damage response af Jiayi Fan, Nalini Dhingra, Tammy Yang, Vicki Yang, Xiaolan Zhao

    Udgivet 2025-08-01

    Activation of the DNA damage checkpoint upon genotoxin treatment induces a multitude of cellular changes to cope with genome stress. After prolonged genotoxin treatment, the checkpoint can be downregulated to allow cell cycle and growth resumption. In yeast, downregulation of the DNA damage checkpoi...

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  12. 12

    Differential roles of NaV1.2 and NaV1.6 in neocortical pyramidal cell excitability af Joshua D Garcia, Chenyu Wang, Ryan PD Alexander, Emmie Banks, Timothy Fenton, Jean-Marc DeKeyser, Tatiana V Abramova, Alfred L George Jr, Roy Ben-Shalom, David H Hackos, Kevin J Bender

    Udgivet 2025-07-01

    Mature neocortical pyramidal cells functionally express two sodium channel (NaV) isoforms: NaV1.2 and NaV1.6. These isoforms are differentially localized to pyramidal cell compartments, and as such are thought to contribute to different aspects of neuronal excitability. But determining their precise...

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  13. 13

    Physical constraints and biological regulations underlie universal osmoresponses af Yiyang Ye, Qirun Wang, Jie Lin

    Udgivet 2025-07-01

    Microorganisms constantly transition between environments with dramatically different external osmolarities. However, theories of microbial osmoresponse integrating physical constraints and biological regulations are lacking. Here, we propose such a theory, utilizing the separation of timescales for...

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  14. 14

    Identifying genetic variations in emm89 Streptococcus pyogenes associated with severe invasive infections af Masayuki Ono, Masaya Yamaguchi, Daisuke Motooka, Yujiro Hirose, Kotaro Higashi, Tomoko Sumitomo, Tohru Miyoshi-Akiyama, Rumi Okuno, Takahiro Yamaguchi, Ryuji Kawahara, Hitoshi Otsuka, Noriko Nakanishi, Yu Kazawa, Chikara Nakagawa, Ryo Yamaguchi, Hiroo Sakai, Yuko Matsumoto, Tadayoshi Ikebe, Shigetada Kawabata

    Udgivet 2025-07-01

    Streptococcus pyogenes causes mild human infections as well as life-threatening invasive diseases. Since the mutations known to enhance virulence to date account for only half of the severe invasive infections, additional mechanisms/mutations need to be identified. Here, we conducted a genome-wide a...

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  15. 15

    Neural circuit mechanisms for steering control in walking Drosophila af Aleksandr Rayshubskiy, Stephen L Holtz, Alexander S Bates, Quinn X Vanderbeck, Laia Serratosa Capdevila, Victoria Rockwell, Rachel Wilson

    Udgivet 2025-07-01

    Orienting behaviors provide a continuous stream of information about an organism’s sensory experiences and plans. Thus, to study the links between sensation and action, it is useful to identify the neurons in the brain that control orienting behaviors. Here, we describe descending neurons in the Dro...

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  16. 16

    Sexual failure decreases sweet taste perception in male Drosophila via dopaminergic signaling af Gaohang Wang, Wei Qi, Rui Huang, Liming Wang

    Udgivet 2025-07-01

    Sweet taste perception, a critical aspect of the initiation of feeding behavior, is primarily regulated by an animal’s internal metabolic state. However, non-metabolic factors, such as motivational and emotional states, can also influence peripheral sensory processing and hence feeding behavior. Whi...

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  17. 17

    Interpretable protein-DNA interactions captured by structure-sequence optimization af Yafan Zhang, Irene Silvernail, Zhuyang Lin, Xingcheng Lin

    Udgivet 2025-07-01

    Sequence-specific DNA recognition underlies essential processes in gene regulation, yet methods for simultaneous predictions of genomic DNA recognition sites and their binding affinity remain lacking. Here, we present the Interpretable protein-DNA Energy Associative (IDEA) model, a residue-level, in...

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  18. 18

    Learning place cells and remapping by decoding the cognitive map af Markus Borud Pettersen, Vemund Schøyen, Anders Malthe-Sørenssen, Mikkel E Lepperød

    Udgivet 2025-07-01

    Hippocampal place cells are known for their spatially selective firing and are believed to encode an animal’s location while forming part of a cognitive map of space. These cells exhibit marked tuning curves and rate changes when an animal’s environment is sufficiently manipulated, in a process know...

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  19. 19

    Disentangling acute motor deficits and adaptive responses evoked by the loss of cerebellar output af Nirvik Sinha, Sharon Israely, Ora Ben Harosh, Ran Harel, Julius PA Dewald, Yifat Prut

    Udgivet 2025-06-01

    Patients with cerebellar damage experience various motor impairments, but the specific sequence of primary and compensatory processes that contribute to these deficits remains unclear. To clarify this, we reversibly blocked cerebellar outflow in monkeys engaged in planar reaching tasks. This interve...

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  20. 20

    Heron, a Knowledge Graph editor for intuitive implementation of Python-based experimental pipelines af George Dimitriadis, Ella Svahn, Andrew F MacAskill, Athena Akrami

    Udgivet 2025-07-01

    To realise a research project, experimenters face conflicting design and implementation choices across hardware and software. These include balancing ease of implementation – time, expertise, and resources – against future flexibility, the number of opaque (black box) components and reproducibility....

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