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  1. 1

    FOLR2+ macrophages in cancer: allies or enemies by Decheng Jiang, Ruiling Xiao, Jialu Bai, Xing Wang, Yuan Fang, Jianzhou Liu, Xiaohan Wang, Ming Cui, Lei You, Yupei Zhao

    Published 2025-06-01

    Abstract The advent of the omics era has facilitated the identification of precise biomarkers for cancer progression, revealing a broader diversity of macrophage phenotypes beyond the traditional M1/M2 classification. Folate receptor 2 (FOLR2)-positive macrophages, co-expressing markers such as mann...

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  2. 2

    CellMemory: hierarchical interpretation of out-of-distribution cells using bottlenecked transformer by Qifei Wang, He Zhu, Yiwen Hu, Yanjie Chen, Yuwei Wang, Guochao Li, Yun Li, Jinfeng Chen, Xuegong Zhang, James Zou, Manolis Kellis, Yue Li, Dianbo Liu, Lan Jiang

    Published 2025-06-01

    Abstract Machine learning methods, especially Transformer architectures, have been widely employed in single-cell omics studies. However, interpretability and accurate representation of out-of-distribution (OOD) cells remains challenging. Inspired by the global workspace theory in cognitive neurosci...

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  3. 3

    Bioharvesting and improvement of nano-silica yield from bagasse by irradiated Curvularia spicifera by Amira G. Zaki, Samah A. Yousef, Yasmeen A. Hasanien

    Published 2025-02-01

    Abstract Background Sugarcane bagasse is an organic waste material abundant in silica. Silica is a very significant inorganic substance that is widely employed in a variety of industrial applications.This study displays an eco-friendly and inexpensive biotransformation process producing silica nanop...

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  4. 4
  5. 5

    Efficacy of convalescent plasma therapy in improving survival in non-immunized COVID-19 patients by Tania Portella Costa, Dayanne Mozaner Bordin, Mateus Nóbrega Aoki, Lucas Blanes

    Published 2025-06-01

    Abstract Purpose Convalescent plasma (CP), obtained from individuals who have recovered from COVID-19, has been widely explored as a potential therapeutic option, particularly in the absence of vaccines and monoclonal antibody treatments. This study aimed to evaluate the effectiveness of CP therapy...

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  6. 6

    Abnormal α-synuclein binds to synaptotagmin 13, impairing extracellular vesicle release in synucleinopathies by Yasuo Miki, Shuji Shimoyama, Makoto T. Tanaka, Hanae Kushibiki, Asa Nakahara, Xiaopeng Wen, Masanori Hijioka, Tomoya Kon, Megha Murthy, Tomonori Furukawa, Conceição Bettencourt, Fumiaki Mori, Hiroki Mizukami, Shirushi Takahashi, Mari Tada, Yoshihisa Kitamura, Akiyoshi Kakita, Thomas T. Warner, Koichi Wakabayashi

    Published 2025-06-01

    Abstract Background Despite increasing in vitro research, direct evidence of how abnormal α-synuclein (α-Syn) dysregulates vesicular transport and synaptic function in the human brain is lacking. Methods We performed a transcriptome analysis using brain tissues from a multiple system atrophy (MSA) m...

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  7. 7

    Comparative evaluation of four commercial analyzers for the serological screening of hepatitis A by Junhyup Song, Jiyeon Kim, Sinyoung Kim, Younhee Park

    Published 2025-06-01

    Abstract Background Serological assays for hepatitis A virus (HAV) play a crucial role in diagnosing acute infections and monitoring disease transmission. Given their widespread use in clinical laboratories, discrepancies among different immunoassay analyzers may have significant clinical implicatio...

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  8. 8

    Implementation evaluation of biometric fingerprint scanning for monitoring HIV care engagement: acceptability, feasibility, and fidelity among peripartum women living with HIV in L... by Wiza Kumwenda, Sophie Lazar, Shaphil Wallie, Madelyn Frey, Denzel Matiya, Michael Owino, Victor Mwapasa, Mina Hosseinipour, Angela M. Bengtson

    Published 2025-06-01

    Abstract Background Sustained HIV care engagement is essential for pregnant women living with HIV (PWLHIV) on lifelong antiretroviral therapy (ART). However, transferring clinics, missed HIV visits, and disengagement from HIV care can make monitoring engagement challenging. This study evaluated the...

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  9. 9

    Magnitude, outcome, and predictors of mortality in perforated peptic ulcer disease: a retrospective study in Jigjiga town, Ethiopia by Abdirahman Burale, Bedhaasa Beyene, Musse Ahmed, Abdullahi Hussen, Mohamed Said Hassan, Shamsedin Mahdi Hassan, Hassan Sh Abdirahman Elmi

    Published 2025-06-01

    Abstract Background Peptic ulcer perforation (PUP) is a surgical emergency and life-threatening complication affecting 2–10% of peptic ulcer disease (PUD) patients. Delayed diagnosis and surgical management are associated with significant morbidity and mortality. This study assessed the magnitude an...

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  10. 10

    Homocysteine(HCY), a novel biomarker for predicting irreversible transmural intestinal necrosis in patients with adhesive small bowel obstruction: results from a prospective observ... by Youlong Zhu, Ruming Liu, Xuan Geng, Dakun Li, Bin Quan, Feifei Kong, Defei Hong

    Published 2025-06-01

    Abstract Background Whether elevated homocysteine level is causally associated with small bowel necrosis remains unestablished. We conducted a prospective observational study to analyze the value of serum homocysteine (HCY) in predicting irreversible transmural intestinal necrosis (ITIN) of adhesive...

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  11. 11

    Risk factors for general complications after hip or knee replacement surgery in elderly patients: a single-center study by Huaxing Zhang, Jingjing Cao, Jia Chen, Xiaoran Ning

    Published 2025-07-01

    Abstract Purpose To determine the risk factors for complications after hip or knee replacement surgery in elderly patients. Methods In total, 401 elderly patients (aged ≥ 65 years) who underwent hip or knee replacement surgery at a hospital from January 2017 to December 2022 were retrospectively ana...

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  12. 12

    The effect of nurse-led individualized education on uncertainty in illness and patient activation in patients undergoing hemodialysis: the IDEAL HD project by Seyyede Leila Sajjadi, Mansour Ghafourifard, Hamid Tayebi Khosroshahi

    Published 2025-06-01

    Abstract Background Patients with end-stage kidney disease suffer from uncertainty in illness and low activation. Individualized education is a new approach in which education is provided on the basis of the patient’s needs and preferences. This study aims to assess the influence of nurse-led indivi...

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  13. 13

    Harnessing magnetic cross-linked cell aggregates (CLCAs) for cost-effective preparation of Konjac mannan-oligosaccharide by Baoyu Cui, Haiqiang Lu, Xue Liu, Yiran Zhang, Xinxi Gu

    Published 2025-06-01

    Abstract Konjac mannan oligosaccharides (KMOS) are currently popular in food additives for their health benefits. However, the simple and efficient preparation of KMOS is still a challenge. In this study, A novel gene encoding β-mannanase (CsMan134) from Cellvibrio sp. KY-GH-1 was displayed on the s...

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  14. 14

    Glial and immune dysregulation in glaucoma independent of retinal ganglion cell loss: a human post-mortem histopathology study by Akanksha Salkar, Viswanthram Palanivel, Devaraj Basavarajappa, Mehdi Mirzaei, Angela Schulz, Peng Yan, Vivek Gupta, Stuart Graham, Yuyi You

    Published 2025-06-01

    Abstract Glaucoma is characterized by progressive retinal ganglion cell (RGC) loss and optic nerve head (ONH) changes, but the roles of glial activation and immune responses remain unclear. This study examines gliosis, microglial diversity, and inflammation in postmortem retinal tissues. Postmortem...

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  15. 15

    Trends in acute care of cerebrovascular events– a joinpoint analysis with German hospital data from 2000 to 2021 by Richard Schmidt, Charlotte Huber, Johann Otto Pelz, Joseph Classen, Dominik Michalski

    Published 2025-06-01

    Abstract Background Acute stroke care has evolved markedly in recent decades, yet long-term trends across stroke subtypes remain understudied. This study analyzed national trends in inpatient stroke care for ischemic stroke (IS), intracerebral hemorrhage (ICH), and subarachnoid hemorrhage (SAH) in G...

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  16. 16

    Paracrine signaling in cancer-associated fibroblasts: central regulators of the tumor immune microenvironment by Ye Li, Longyun Wang, Wenzhe Ma, Jibiao Wu, Qibiao Wu, Changgang Sun

    Published 2025-06-01

    Abstract Despite groundbreaking advances in cancer immunotherapy, clinical efficacy remains constrained by the immunosuppressive tumor microenvironment (TME). As key stromal components within this TME, cancer-associated fibroblasts (CAFs) emerge as pivotal regulators of drug resistance and immune ev...

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  17. 17

    The differential expression of MAGI2 in glomerulopathies and its application as a molecular discriminator of podocytopathies by Florian Siegerist, Eleonora Hay, Elke Hammer, Anna Iervolino, Claudia Weber, Juan Saydou Dikou, Eleni Stamellou, Linus Butt, Thomas Benzing, Thorsten Wiech, Paul T. Brinkötter, Uwe Zimmerman, Giovambattista Capasso, Christos Chatziantoniou, Christos E. Chadjichristos, Tobias B. Huber, Uwe Völker, Maximilian Schindler, Nicole Endlich

    Published 2025-06-01

    Abstract Background Podocyte dysfunction is central to various glomerular diseases, necessitating reliable biomarkers for early detection and diagnosis. This study investigates the regulatory mechanisms of membrane-associated guanylate kinase inverted 2 (MAGI2) and its potential as a biomarker for p...

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  18. 18

    spCLUE: a contrastive learning approach to unified spatial transcriptomics analysis across single-slice and multi-slice data by Xiang Wang, Wei Vivian Li, Hongwei Li

    Published 2025-06-01

    Abstract Advances in spatial transcriptomics demand new tools to integrate data across tissue slices and identify consistent spatial domains. We introduce spCLUE, a comprehensive framework combining multi-view graph network, contrastive learning, attention mechanisms, and a batch prompting module to...

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  19. 19

    Mapping MAVE data for use in human genomics applications by Jeremy A. Arbesfeld, Estelle Y. Da, James S. Stevenson, Kori Kuzma, Anika Paul, Tierra Farris, Benjamin J. Capodanno, Sally B. Grindstaff, Kevin Riehle, Nuno Saraiva-Agostinho, Jordan F. Safer, Jonathan Casper, Maximilian Haeussler, Aleksandar Milosavljevic, Julia Foreman, Helen V. Firth, Sarah E. Hunt, Sumaiya Iqbal, Melissa S. Cline, Alan F. Rubin, Alex H. Wagner

    Published 2025-06-01

    Abstract Background Experimental data from functional assays have a critical role in interpreting the impact of genetic variants. Assay data must be unambiguously mapped to a reference genome to make it accessible, but it is often reported relative to assay-specific sequences, complicating downstrea...

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  20. 20

    Detection of virulence genes in Helicobacter pylori and its correlation with drug resistance by polymerase chain reaction by Chang-Jun Men, Shu-Xuan Shan, Zhen-Yi Ou, Hong-Li Fu, Bei Wang, Yue Tong, Qi Gan, Meng Meng, Ri-Mo Xi

    Published 2025-06-01

    Abstract Objectives This article aimed to investigate the virulence gene profile of Helicobacter pylori (H. pylori) clinical isolates and explore potential correlations between virulence genes and antimicrobial resistance. Methods Fifty-six H. pylori strains isolated from gastric biopsy specimens we...

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