Search Results - "metabolomics"

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  1. 1

    In vitro metabolic interaction network of a rationally designed nasal microbiota community by Laura Bonillo-Lopez, Oussama Rouam-el Khatab, Pau Obregon-Gutierrez, Joana Almansa Fernandez-Villacañas, Igor Florez-Sarasa, Florencia Correa-Fiz, Marina Sibila, Virginia Aragon, Karl Kochanowski

    Published 2025-08-01

    Summary: Mounting evidence suggests that metabolite exchange between microbiota members is a key driver of microbiota composition. However, we still know little about the metabolic interaction networks within many microbiota. To tackle this issue, we developed the porcine nasal consortium (PNC8), wh...

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    Integrated transcriptomic and metabolomic analyses identify key factors in the vitellogenesis of juvenile Sichuan bream (Sinibrama taeniatus) by Zhe Zhao, Zhe Zhao, Qiang Zhao, Qiang Zhao, Haoyu Wang, Haoyu Wang, Lan Wei, Siya Wang, Siya Wang, Shilin Li, Shilin Li, Dengyue Yuan, Dengyue Yuan, Zhijian Wang, Zhijian Wang

    Published 2023-10-01

    Vitellogenesis is the most important stage of ovarian maturation in fish, involving the synthesis and transport of essential yolk substances and their complex mechanisms and coordination process. The liver is the main tissue involved in the vitellogenesis of oviparous animals, but studies of vitello...

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    Untargeted metabolomics revealed urinary metabolic pattern for discriminating prostate cancer from benign prostatic hyperplasia in Chinese participants by Chenye Tang, Xiao Guo, Qian Zou, Xinghao Wang, Jian Sheng, Dan Shen, Chun Sun, Shuo Li, Ruilin Shen

    Published 2025-06-01

    IntroductionPrecise screening and discriminating of prostatic hyperplasia (PH) could avoid unnecessary biopsy and overdiagnosis. However, the metabolic pattern of patients with prostatic hyperplasia in Chinese population is rarely reported.MethodsUrine samples of Chinese participants with prostate c...

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    Deciphering dynamic antibiotics-microbiome-metabolome interactions in preterm infants using systems biology by Seo-Young Park, Yi Qing Lee, Dongseok Kim, Dong Kyung Sung, Kyeong-Seog Kim, Jae-Seung Lee, Joo-Youn Cho, Wonsik Lee, Se In Sung, Dong-Yup Lee

    Published 2025-08-01

    Summary: Preterm infants are frequently administered antibiotics to prevent infections, yet their impact on the developing gut microbiota and metabolome remains complex and clinically significant. To systematically assess these effects, we analyzed longitudinal stool samples from 54 extremely- and v...

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    An Integrated Approach Involving Metabolomics and Transcriptomics Reveals Arsenic-Induced Toxicity in Human Renal Cells by Lin Rong, Xinxin Liang, Xingfang Zhang, Yajun Qiao, Guoqiang Li, Yuancan Xiao, Hongtao Bi, Lixin Wei

    Published 2025-06-01

    Accumulating epidemiological evidence has indicated that arsenic exposure can lead to kidney injury. However, the underlying mechanisms of arsenic-induced nephrotoxicity have not been fully elucidated. In this study, the effect of sodium arsenite on the cell viability of HEK-293 cells was studied us...

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    Understanding the Metabolic Effects of Surgically Induced Renal Ischemia in Humans: A Temporal Approach by Bhargav Arimilli, Tyler A. On, Vaishnavi S. Srirama, Ye Yang, Gitanjali Asampille, Jeffrey R. Brender, Murali C. Krishna, Jessica Y. Hseuh, Viraj P. Chegu, Zachary Kozel, Sandeep Gurram, Mark W. Ball, William Marston Linehan, Daniel R. Crooks

    Published 2025-07-01

    <b>Background/Objectives</b>: Thousands of nephrectomies are performed annually in the United States, but the short-term metabolic effects of surgically induced renal ischemia remain unclear. The conventional metabolic markers used to characterize post-surgical renal function, such as cr...

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    The Deep Mining Era: Genomic, Metabolomic, and Integrative Approaches to Microbial Natural Products from 2018 to 2024 by Zhaochao Wang, Juanjuan Yu, Chenjie Wang, Yi Hua, Hong Wang, Jianwei Chen

    Published 2025-06-01

    Over the past decade, microbial natural products research has witnessed a transformative “deep-mining era” driven by key technological advances such as high-throughput sequencing (e.g., PacBio HiFi), ultra-sensitive HRMS (resolution ≥ 100,000), and multi-omics synergy. These innovations have shifted...

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    Metabolic comparison of minimally to noninvasive urogenital sample types for studying gynecologic health: A pilot study by Holly Chatenoud, Paweł Łaniewski, Nichole D. Mahnert, Melissa M. Herbst-Kralovetz

    Published 2025-07-01

    Summary: In this pilot study, we investigated three minimally to noninvasive biospecimens: cervicovaginal lavages (CVLs), vaginal swabs, and urine, from 18 premenopausal women using untargeted metabolomics to inform future gynecologic research. Metabolic profiles were compared between specimen types...

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    Metabolomics analysis to elucidate the mechanisms underlying the accumulation of phenolic compounds in fresh-cut red cabbages under ultrasonic stress by Chen Hong, Lina Guo, Ping Wu, Ningning Ouyang, Xinyan Zhang, Haile Ma, Wenjuan Qu

    Published 2025-09-01

    Ultrasonic washing, as a form of abiotic stress, has been proven to trigger the biosynthesis of phenolic compounds (PCs) in fresh-cut red cabbages (FRCs). However, the related regulatory mechanisms remain unclear. This study preliminarily evaluated the enrichment mechanisms of PCs in FRCs under ultr...

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    Mass spectrometry dataset of conventional and organic tempe before and after in vitro digestionMendeley Data by Nurul Syahidah Mio Asni, Norazlan Mohmad Misnan, Ahmed Mediani, Ivana Nur Allisya Rozlan, Nurul Amalia Zahari, Syarul Nataqain Baharum, Nurkhalida Kamal

    Published 2025-08-01

    Tempe is a superior plant-based protein source that provides a diverse array of nutritional benefits as a result of the presence of bioactive metabolites. Nevertheless, there is a scarcity of information regarding the metabolomics profile between organic and conventional tempe and the fate of these...

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    Multi-omics characterization of diabetic nephropathy in the db/db mouse model of type 2 diabetes by Liping Wang, Ran Zhou, Guanghui Li, Xiaodan Zhang, Yan Li, Yinchen Shen, Junwei Fang

    Published 2025-01-01

    Background: Despite optimized blood pressure control and glycemic management reducing the incidence of diabetic nephropathy (DN), significant residual risk remains, suggesting the contribution of pathogenic factors independent of glucose metabolism and hemodynamic disturbances. Methods: Renal tissue...

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    The Metabolomic View of Systemic Sclerosis—A Systematic Literature Review by Sebastian T. Jendrek, Franziska Schmelter, Christian Sina, Ulrich L. Günther, Gabriela Riemekasten

    Published 2025-05-01

    The mortality risk in systemic sclerosis (SSc) is primarily determined by pulmonary involvement (interstitial lung disease (ILD), pulmonary fibrosis), pulmonary arterial hypertension (PAH), and cardiac involvement. With timely and intensive treatment, the disease can be halted or even improved. Ther...

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    Obesity-Associated Metabolomic and Functional Reprogramming in Neutrophils from Horses with Asthma by Alejandro Albornoz, Beatriz Morales, Valentina Bernal Fernandez, Claudio Henriquez, John Quiroga, Pablo Alarcón, Gabriel Moran, Rafael A. Burgos

    Published 2025-07-01

    Equine asthma is a chronic respiratory disease characterised by neutrophilic inflammation, airway hyperresponsiveness, and impaired pulmonary function. Obesity, increasingly prevalent among domestic horses, has been identified as a potential risk factor for exacerbating inflammatory conditions. This...

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    Molecular Tactics of Biocontrol Fungi to Hack Plant Immunity for Successful Host Colonization—A Focus on <i>Trichoderma</i> Fungi by Yingfen Yang, Meiwei Zhao, Guotao Li, Ying Wang, Qingqing Shen, Jun Yang, Tahani A. Y. Asseri, Yanjun Wang, Min Guo, Waqar Ahmed

    Published 2025-05-01

    To play a role effectively, biocontrol fungi must fight against plant immune response and establish a symbiotic interaction with their host. After successfully colonizing the host plant, the biocontrol fungi may deliver beneficial effects related to plant health and resistance against phytopathogens...

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    The perspectives of metabolomics studies of potato plants by R. K. Puzanskiy, V. V. Yemelyanov, T. A. Gavrilenko, M. F. Shishova

    Published 2017-03-01

    According to FAO (Food and Agricultural Organization of the United Nation), potato is the fourth crop in terms of food production after rice, wheat and maize, and the first among the tubers and roots. The importance of potato is difficult to overestimate; it is a valuable source of carbohydrates, an...

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    Metabolite Profiles of Heart Failure, Central Hemodynamic Derangement, and Response to Heart Transplantation by Carl Lejonberg, Tomasz Czuba, Anna Egerstedt, Nilanjana Ghosh, Selvi Celik, Charlotta Ljungman, Jakob Lundgren, Göran Rådegran, Olof Gidlöf, J. Gustav Smith

    Published 2025-07-01

    Background Heart failure (HF) is characterized by hemodynamic derangements that are likely to mediate systemic metabolic perturbations but limited data are available. Plasma metabolite profiling provides opportunities for comprehensive investigation of such perturbations. Here, we aimed to character...

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    Differential metabolites and their transcriptional regulation in seven major tea cultivars (Camellia sinensis) in China by Ting GAO, Bing-hao HOU, Shu-xian SHAO, Meng-ting XU, Yu-cheng ZHENG, Shan JIN, Peng-jie WANG, Nai-xing YE

    Published 2023-11-01

    Various genetic and biochemical characteristics exist in tea plant cultivars, and they largely determine production suitability and tea quality. Here, we performed transcriptomic and metabolomic analyses of young shoots of seven tea cultivars and identified major regulatory transcription factors (TF...

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    Metabolomics and Transcriptome Analysis of Rapeseed Under Salt Stress at Germination Stage by Menglin Zhou, Xi Song, Qingqing Yu, Bingbing Dai, Wei Zhou, Xiaofei Zan, Wuming Deng

    Published 2025-06-01

    Salt stress is a significant abiotic factor that adversely impacts the yield of rapeseed (<i>Brassica napus</i> L.). Under salt stress conditions, the growth of rapeseed is markedly inhibited. This study integrates transcriptomic and metabolomic analyses to elucidate the molecular and ph...

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    Integrating multiple “omics” analysis for plant metabolites and their functions by ZHOU Guoyan, HU Wangxiong, XU Jianhong, XUE Qingzhong

    Published 2013-05-01

    A comprehensive analysis of a series of metabolites that produced by the organisms in the life processes will help to reveal the biological links between genotype and phenotype. Metabolomics is the method to analyze the metabolites by “omics”, which includes genomics, transcriptomics, and proteomics...

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