GAG Protein of <i>Arabidopsis thaliana</i> LTR Retrotransposon Forms Retrosome-like Cytoplasmic Granules and Activates Stress Response Genes

GAG Protein of <i>Arabidopsis thaliana</i> LTR Retrotransposon Forms Retrosome-like Cytoplasmic Granules and Activates Stress Response Genes

LTR retrotransposons are widespread genomic elements that significantly impact genome structure and function. In <i>Arabidopsis thaliana</i>, the EVD LTR retrotransposon encodes a GAG protein essential for retrotransposon particle assembly. Here, we present a comprehensive analysis of th...

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Bibliographic Details
Main Authors: Alexander Polkhovskiy, Roman Komakhin, Ilya Kirov
Format: Article
Language:English
Published: MDPI AG 2025-06-01
Series:Plants
Subjects:
LTR retrotransposon
GAG
RNA-Seq
Cellular aggregates
RNAseq
Online Access:https://www.mdpi.com/2223-7747/14/13/1894
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Summary:LTR retrotransposons are widespread genomic elements that significantly impact genome structure and function. In <i>Arabidopsis thaliana</i>, the EVD LTR retrotransposon encodes a GAG protein essential for retrotransposon particle assembly. Here, we present a comprehensive analysis of the structural features, intracellular localization, and transcriptomic effects of the EVD GAG (evdGAG) protein. Using AlphaFold3, we identified canonical capsid (CA-NTD and CA-CTD) and nucleocapsid (NC) domains, with predicted disordered regions likely facilitating oligomerization. Transient expression of GFP-tagged evdGAG in protoplasts of <i>A. thaliana</i> and distant plant species (<i>Nicotiana benthamiana</i> and <i>Helianthus annuus</i>) revealed the formation of multiple large cytoplasmic aggregates resembling retrosomes, often localized near the nucleus. Stable overexpression of evdGAG in wild-type and <i>ddm1</i> mutant backgrounds induced significant transcriptomic changes, including up-regulation of stress response and defense-related genes and downregulation of photosynthesis and chloroplast-associated pathways. Importantly, genes linked to stress granule formation were also up-regulated, suggesting a role for evdGAG in modulating cellular stress responses. Our findings provide novel insights into the cellular and molecular properties of plant retrotransposon GAG proteins and their influence on host gene expression.
ISSN:2223-7747

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