QTL mapping revealed TaVp-1A conferred pre-harvest sprouting resistance in wheat population Yanda 1817×Beinong 6
Pre-harvest sprouting (PHS) occurs frequently in most of the wheat cultivation area worldwide, which severely reduces yield and end-use quality, resulting in substantial economic loss. In this study, quantitative trait loci (QTL) for PHS resistance were mapped using an available high-density single...
Saved in:
| Main Authors: | , , , , , , , , , , , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
KeAi Communications Co., Ltd.
2017-02-01
|
| Series: | Journal of Integrative Agriculture |
| Subjects: | |
| Online Access: | http://www.sciencedirect.com/science/article/pii/S2095311916613618 |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
| _version_ | 1839598842660519936 |
|---|---|
| author | Sheng-hui ZHOU Lin FU Qiu-hong WU Jiao-jiao CHEN Yong-xing CHEN Jing-zhong XIE Zhen-zhong WANG Guo-xin WANG De-yun ZHANG Yong LIANG Yan ZHANG Ming-shan YOU Rong-qi LIANG Jun HAN Zhi-yong LIU |
| author_facet | Sheng-hui ZHOU Lin FU Qiu-hong WU Jiao-jiao CHEN Yong-xing CHEN Jing-zhong XIE Zhen-zhong WANG Guo-xin WANG De-yun ZHANG Yong LIANG Yan ZHANG Ming-shan YOU Rong-qi LIANG Jun HAN Zhi-yong LIU |
| author_sort | Sheng-hui ZHOU |
| collection | DOAJ |
| description | Pre-harvest sprouting (PHS) occurs frequently in most of the wheat cultivation area worldwide, which severely reduces yield and end-use quality, resulting in substantial economic loss. In this study, quantitative trait loci (QTL) for PHS resistance were mapped using an available high-density single nucleotide polymorphism (SNP) and simple sequence repeat (SSR) genetic linkage map developed from a 269 recombinant inbred lines (RILs) population of Yanda 1817×Beinong 6. Using phenotypic data on two locations (Beijing and Shijiazhuang, China) in two years (2012 and 2013 harvesting seasons), five QTLs, designated as QPhs.cau-3A.1, QPhs.cau-3A.2, QPhs.cau-5B, QPhs.cau-4A, and QPhs.cau-6A, for PHS (GP) were detected by inclusive composite interval mapping (ICIM) (LOD≥2.5). Two major QTLs, QPhs.cau-3A.2 and QPhs.cau-5B, were mapped on 3AL and 5BS chromosome arms, explaining 6.29–21.65% and 4.36–5.94% of the phenotypic variance, respectively. Precise mapping and comparative genomic analysis revealed that the TaVp-1A flanking region on 3AL is responsible for QPhs.cau-3A.2. SNP markers flanking QPhs.cau-3A.2 genomic region were developed and could be used for introgression of PHS tolerance into high yielding wheat varieties through marker-assisted selection (MAS). |
| format | Article |
| id | doaj-art-a48a8b3e87614bc88b0b5f9d0a83bc8d |
| institution | Matheson Library |
| issn | 2095-3119 |
| language | English |
| publishDate | 2017-02-01 |
| publisher | KeAi Communications Co., Ltd. |
| record_format | Article |
| series | Journal of Integrative Agriculture |
| spelling | doaj-art-a48a8b3e87614bc88b0b5f9d0a83bc8d2025-08-02T15:46:36ZengKeAi Communications Co., Ltd.Journal of Integrative Agriculture2095-31192017-02-01162435444QTL mapping revealed TaVp-1A conferred pre-harvest sprouting resistance in wheat population Yanda 1817×Beinong 6Sheng-hui ZHOU0Lin FU1Qiu-hong WU2Jiao-jiao CHEN3Yong-xing CHEN4Jing-zhong XIE5Zhen-zhong WANG6Guo-xin WANG7De-yun ZHANG8Yong LIANG9Yan ZHANG10Ming-shan YOU11Rong-qi LIANG12Jun HAN13Zhi-yong LIU14State Key Laboratory for Agrobiotechnology, China Agricultural University, Beijing 100193, P.R. ChinaState Key Laboratory for Agrobiotechnology, China Agricultural University, Beijing 100193, P.R. ChinaInstitute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, P.R. ChinaState Key Laboratory for Agrobiotechnology, China Agricultural University, Beijing 100193, P.R. ChinaState Key Laboratory for Agrobiotechnology, China Agricultural University, Beijing 100193, P.R. ChinaState Key Laboratory for Agrobiotechnology, China Agricultural University, Beijing 100193, P.R. ChinaChina Rural Technology Development Center, Beijing 100045, P.R. ChinaState Key Laboratory for Agrobiotechnology, China Agricultural University, Beijing 100193, P.R. ChinaState Key Laboratory for Agrobiotechnology, China Agricultural University, Beijing 100193, P.R. ChinaState Key Laboratory for Agrobiotechnology, China Agricultural University, Beijing 100193, P.R. ChinaState Key Laboratory for Agrobiotechnology, China Agricultural University, Beijing 100193, P.R. ChinaState Key Laboratory for Agrobiotechnology, China Agricultural University, Beijing 100193, P.R. ChinaState Key Laboratory for Agrobiotechnology, China Agricultural University, Beijing 100193, P.R. ChinaCollege of Plant Science and Technology, Beijing University of Agriculture, Beijing 102206, P.R. ChinaState Key Laboratory for Agrobiotechnology, China Agricultural University, Beijing 100193, P.R. China; Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, P.R. China; Correspondence LIU Zhi-yong, Tel: +86-10-64806422Pre-harvest sprouting (PHS) occurs frequently in most of the wheat cultivation area worldwide, which severely reduces yield and end-use quality, resulting in substantial economic loss. In this study, quantitative trait loci (QTL) for PHS resistance were mapped using an available high-density single nucleotide polymorphism (SNP) and simple sequence repeat (SSR) genetic linkage map developed from a 269 recombinant inbred lines (RILs) population of Yanda 1817×Beinong 6. Using phenotypic data on two locations (Beijing and Shijiazhuang, China) in two years (2012 and 2013 harvesting seasons), five QTLs, designated as QPhs.cau-3A.1, QPhs.cau-3A.2, QPhs.cau-5B, QPhs.cau-4A, and QPhs.cau-6A, for PHS (GP) were detected by inclusive composite interval mapping (ICIM) (LOD≥2.5). Two major QTLs, QPhs.cau-3A.2 and QPhs.cau-5B, were mapped on 3AL and 5BS chromosome arms, explaining 6.29–21.65% and 4.36–5.94% of the phenotypic variance, respectively. Precise mapping and comparative genomic analysis revealed that the TaVp-1A flanking region on 3AL is responsible for QPhs.cau-3A.2. SNP markers flanking QPhs.cau-3A.2 genomic region were developed and could be used for introgression of PHS tolerance into high yielding wheat varieties through marker-assisted selection (MAS).http://www.sciencedirect.com/science/article/pii/S2095311916613618wheatpre-harvest sproutingquantitative trait lociSNPTaVp-1A |
| spellingShingle | Sheng-hui ZHOU Lin FU Qiu-hong WU Jiao-jiao CHEN Yong-xing CHEN Jing-zhong XIE Zhen-zhong WANG Guo-xin WANG De-yun ZHANG Yong LIANG Yan ZHANG Ming-shan YOU Rong-qi LIANG Jun HAN Zhi-yong LIU QTL mapping revealed TaVp-1A conferred pre-harvest sprouting resistance in wheat population Yanda 1817×Beinong 6 Journal of Integrative Agriculture wheat pre-harvest sprouting quantitative trait loci SNP TaVp-1A |
| title | QTL mapping revealed TaVp-1A conferred pre-harvest sprouting resistance in wheat population Yanda 1817×Beinong 6 |
| title_full | QTL mapping revealed TaVp-1A conferred pre-harvest sprouting resistance in wheat population Yanda 1817×Beinong 6 |
| title_fullStr | QTL mapping revealed TaVp-1A conferred pre-harvest sprouting resistance in wheat population Yanda 1817×Beinong 6 |
| title_full_unstemmed | QTL mapping revealed TaVp-1A conferred pre-harvest sprouting resistance in wheat population Yanda 1817×Beinong 6 |
| title_short | QTL mapping revealed TaVp-1A conferred pre-harvest sprouting resistance in wheat population Yanda 1817×Beinong 6 |
| title_sort | qtl mapping revealed tavp 1a conferred pre harvest sprouting resistance in wheat population yanda 1817 beinong 6 |
| topic | wheat pre-harvest sprouting quantitative trait loci SNP TaVp-1A |
| url | http://www.sciencedirect.com/science/article/pii/S2095311916613618 |
| work_keys_str_mv | AT shenghuizhou qtlmappingrevealedtavp1aconferredpreharvestsproutingresistanceinwheatpopulationyanda1817beinong6 AT linfu qtlmappingrevealedtavp1aconferredpreharvestsproutingresistanceinwheatpopulationyanda1817beinong6 AT qiuhongwu qtlmappingrevealedtavp1aconferredpreharvestsproutingresistanceinwheatpopulationyanda1817beinong6 AT jiaojiaochen qtlmappingrevealedtavp1aconferredpreharvestsproutingresistanceinwheatpopulationyanda1817beinong6 AT yongxingchen qtlmappingrevealedtavp1aconferredpreharvestsproutingresistanceinwheatpopulationyanda1817beinong6 AT jingzhongxie qtlmappingrevealedtavp1aconferredpreharvestsproutingresistanceinwheatpopulationyanda1817beinong6 AT zhenzhongwang qtlmappingrevealedtavp1aconferredpreharvestsproutingresistanceinwheatpopulationyanda1817beinong6 AT guoxinwang qtlmappingrevealedtavp1aconferredpreharvestsproutingresistanceinwheatpopulationyanda1817beinong6 AT deyunzhang qtlmappingrevealedtavp1aconferredpreharvestsproutingresistanceinwheatpopulationyanda1817beinong6 AT yongliang qtlmappingrevealedtavp1aconferredpreharvestsproutingresistanceinwheatpopulationyanda1817beinong6 AT yanzhang qtlmappingrevealedtavp1aconferredpreharvestsproutingresistanceinwheatpopulationyanda1817beinong6 AT mingshanyou qtlmappingrevealedtavp1aconferredpreharvestsproutingresistanceinwheatpopulationyanda1817beinong6 AT rongqiliang qtlmappingrevealedtavp1aconferredpreharvestsproutingresistanceinwheatpopulationyanda1817beinong6 AT junhan qtlmappingrevealedtavp1aconferredpreharvestsproutingresistanceinwheatpopulationyanda1817beinong6 AT zhiyongliu qtlmappingrevealedtavp1aconferredpreharvestsproutingresistanceinwheatpopulationyanda1817beinong6 |