Restoration of Out-of-Focus Fluorescence Microscopy Images Using Learning-Based Depth-Variant Deconvolution

Restoration of Out-of-Focus Fluorescence Microscopy Images Using Learning-Based Depth-Variant Deconvolution

Image quality is degraded in the out-of-focus region because of the depth-variant (DV) point spread function (DV-PSF) of a fluorescence microscope. Either non-blind or blind deconvolution for restoration results in limited improvement. In this work, we propose a two-step learning-based DV deconvolut...

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Bibliographic Details
Main Authors: Da He, De Cai, Jiasheng Zhou, Jiajia Luo, Sung-Liang Chen
Format: Article
Language:English
Published: IEEE 2020-01-01
Series:IEEE Photonics Journal
Subjects:
Fluorescence microscopy
convolutional neural network
deconvolution
Online Access:https://ieeexplore.ieee.org/document/9001232/
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Summary:Image quality is degraded in the out-of-focus region because of the depth-variant (DV) point spread function (DV-PSF) of a fluorescence microscope. Either non-blind or blind deconvolution for restoration results in limited improvement. In this work, we propose a two-step learning-based DV deconvolution (LB-DVD) to restore the out-of-focus image. In the first step, DV-PSF is predicted by a defocus level prediction convolutional neural network (DelpNet). In the second step, the extracted DV-PSF is used for DV deconvolution. To our knowledge, LB-DVD is proposed and demonstrated for the first time. DelpNet achieves an accuracy of 98.2&#x0025; for predicting defocus levels of image patches (<inline-formula><tex-math notation="LaTeX">$84 \times 84$</tex-math></inline-formula> pixels). The subsequent DV deconvolution gives rise to good performance in peak signal-to-noise ratios and structural similarity index, which are improved by up to 6.6&#x00A0;dB and 11&#x0025;, respectively, before and after the deconvolution. As for a wide-field image, there exist different DV-PSFs within the two-dimensional fluorescence image due to the surface undulation. An overlapping weighting patch-wise LB-DVD is used in image montage to eliminate patch boundary artifacts. As a result, our LB-DVD shows the feasibility and promise to be applied to typical fluorescence microscopy in practical applications.
ISSN:1943-0655

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