Scalable and Efficient Protein Secondary Structure Prediction Using Autoencoder-Reduced ProtBERT Embeddings

This study proposes a deep learning framework for Protein Secondary Structure Prediction (PSSP) that prioritizes computational efficiency while preserving classification accuracy. Leveraging ProtBERT-derived embeddings, we apply autoencoder-based dimensionality reduction to compress high-dimensional...

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Bibliographic Details
Main Authors: Yahya Najib Hamood Al-Shameri, İrfan Kösesoy, Hakan Gündüz, Ömer Faruk Yılmaz
Format: Article
Language:English
Published: MDPI AG 2025-06-01
Series:Applied Sciences
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Online Access:https://www.mdpi.com/2076-3417/15/13/7112
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