Mitochondrial genome of Lipaphis pseudobrassicae (Davis, 1914) and phylogenetic analysis of Aphidinae
Lipaphis pseudobrassicae (Davis, 1914) is an important agricultural insect pest. In this study, we sequenced and analyzed the entire mitochondrial genome of L. pseudobrassicae, and reconstructed the phylogenetic relationships of Aphidinae based on the mitochondrial genome data. In phylogenetic analy...
Saved in:
| Main Authors: | , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Zhejiang University Press
2024-02-01
|
| Series: | 浙江大学学报. 农业与生命科学版 |
| Subjects: | |
| Online Access: | https://www.academax.com/doi/10.3785/j.issn.1008-9209.2023.02.161 |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
| _version_ | 1839607906207531008 |
|---|---|
| author | LIN Xingyu SONG Nan |
| author_facet | LIN Xingyu SONG Nan |
| author_sort | LIN Xingyu |
| collection | DOAJ |
| description | Lipaphis pseudobrassicae (Davis, 1914) is an important agricultural insect pest. In this study, we sequenced and analyzed the entire mitochondrial genome of L. pseudobrassicae, and reconstructed the phylogenetic relationships of Aphidinae based on the mitochondrial genome data. In phylogenetic analyses, the ingroup included 31 species of Aphidinae, while the outgroup selected three species of Eriosomatinae (Eriosoma lanigerum, Paracolopha morrisoni and Meitanaphis microgallis). The maximum likelihood method and Bayesian method were used to reconstruct the phylogenetic tree of Aphidinae, respectively. The results showed that the mitochondrial genome of L. pseudobrassicae was 16 743 bp in length (GenBank accession No. OP796483), which contained 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes and one non-coding control region. The phylogenetic tree constructed by the maximum likelihood method and Bayesian method both showed that the tribe Aphidini was a monophyletic group. The tribe Macrosiphini was recovered as a monophyletic group, and Lipaphis was a sister to Brevicoryne according to the maximum likelihood method. However, the tribe Macrosiphini was recovered as a non-monophyletic group, and Lipaphis was a sister to Brevicoryne+Diuraphis according to the Bayesian method. This study can enhance the understanding of the phylogenetic relationships among Macrosiphini, Lipaphis, and L. pseudobrassicae by utilizing mitochondrial genome data. |
| format | Article |
| id | doaj-art-4fe0a487072e4e109d9f5ebf80d3d9f0 |
| institution | Matheson Library |
| issn | 1008-9209 2097-5155 |
| language | English |
| publishDate | 2024-02-01 |
| publisher | Zhejiang University Press |
| record_format | Article |
| series | 浙江大学学报. 农业与生命科学版 |
| spelling | doaj-art-4fe0a487072e4e109d9f5ebf80d3d9f02025-08-01T03:50:59ZengZhejiang University Press浙江大学学报. 农业与生命科学版1008-92092097-51552024-02-0150536410.3785/j.issn.1008-9209.2023.02.16110089209Mitochondrial genome of Lipaphis pseudobrassicae (Davis, 1914) and phylogenetic analysis of AphidinaeLIN XingyuSONG NanLipaphis pseudobrassicae (Davis, 1914) is an important agricultural insect pest. In this study, we sequenced and analyzed the entire mitochondrial genome of L. pseudobrassicae, and reconstructed the phylogenetic relationships of Aphidinae based on the mitochondrial genome data. In phylogenetic analyses, the ingroup included 31 species of Aphidinae, while the outgroup selected three species of Eriosomatinae (Eriosoma lanigerum, Paracolopha morrisoni and Meitanaphis microgallis). The maximum likelihood method and Bayesian method were used to reconstruct the phylogenetic tree of Aphidinae, respectively. The results showed that the mitochondrial genome of L. pseudobrassicae was 16 743 bp in length (GenBank accession No. OP796483), which contained 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes and one non-coding control region. The phylogenetic tree constructed by the maximum likelihood method and Bayesian method both showed that the tribe Aphidini was a monophyletic group. The tribe Macrosiphini was recovered as a monophyletic group, and Lipaphis was a sister to Brevicoryne according to the maximum likelihood method. However, the tribe Macrosiphini was recovered as a non-monophyletic group, and Lipaphis was a sister to Brevicoryne+Diuraphis according to the Bayesian method. This study can enhance the understanding of the phylogenetic relationships among Macrosiphini, Lipaphis, and L. pseudobrassicae by utilizing mitochondrial genome data.https://www.academax.com/doi/10.3785/j.issn.1008-9209.2023.02.161HemipteraAphidinae<italic>Lipaphis pseudobrassicae</italic> (Davis, 1914)mitochondrial genomephylogeny |
| spellingShingle | LIN Xingyu SONG Nan Mitochondrial genome of Lipaphis pseudobrassicae (Davis, 1914) and phylogenetic analysis of Aphidinae 浙江大学学报. 农业与生命科学版 Hemiptera Aphidinae <italic>Lipaphis pseudobrassicae</italic> (Davis, 1914) mitochondrial genome phylogeny |
| title | Mitochondrial genome of Lipaphis pseudobrassicae (Davis, 1914) and phylogenetic analysis of Aphidinae |
| title_full | Mitochondrial genome of Lipaphis pseudobrassicae (Davis, 1914) and phylogenetic analysis of Aphidinae |
| title_fullStr | Mitochondrial genome of Lipaphis pseudobrassicae (Davis, 1914) and phylogenetic analysis of Aphidinae |
| title_full_unstemmed | Mitochondrial genome of Lipaphis pseudobrassicae (Davis, 1914) and phylogenetic analysis of Aphidinae |
| title_short | Mitochondrial genome of Lipaphis pseudobrassicae (Davis, 1914) and phylogenetic analysis of Aphidinae |
| title_sort | mitochondrial genome of lipaphis pseudobrassicae davis 1914 and phylogenetic analysis of aphidinae |
| topic | Hemiptera Aphidinae <italic>Lipaphis pseudobrassicae</italic> (Davis, 1914) mitochondrial genome phylogeny |
| url | https://www.academax.com/doi/10.3785/j.issn.1008-9209.2023.02.161 |
| work_keys_str_mv | AT linxingyu mitochondrialgenomeoflipaphispseudobrassicaedavis1914andphylogeneticanalysisofaphidinae AT songnan mitochondrialgenomeoflipaphispseudobrassicaedavis1914andphylogeneticanalysisofaphidinae |